Package: MVR 1.34.0
Jean-Eudes Dazard
MVR: Mean-Variance Regularization
Implements a non-parametric method for joint adaptive mean-variance regularization and variance stabilization of high-dimensional data. It is suited for handling difficult problems posed by high-dimensional multivariate datasets (p >> n paradigm). Among those are that the variance is often a function of the mean, variable-specific estimators of variances are not reliable, and tests statistics have low powers due to a lack of degrees of freedom. Key features include: (i) Normalization and/or variance stabilization of the data, (ii) Computation of mean-variance-regularized t-statistics (F-statistics to follow), (iii) Generation of diverse diagnostic plots, (iv) Computationally efficient implementation using C/C++ interfacing and an option for parallel computing to enjoy a faster and easier experience in the R environment.
Authors:
MVR_1.34.0.tar.gz
MVR_1.34.0.zip(r-4.5)MVR_1.34.0.zip(r-4.4)MVR_1.34.0.zip(r-4.3)
MVR_1.34.0.tgz(r-4.4-x86_64)MVR_1.34.0.tgz(r-4.4-arm64)MVR_1.34.0.tgz(r-4.3-x86_64)MVR_1.34.0.tgz(r-4.3-arm64)
MVR_1.34.0.tar.gz(r-4.5-noble)MVR_1.34.0.tar.gz(r-4.4-noble)
MVR_1.34.0.tgz(r-4.4-emscripten)MVR_1.34.0.tgz(r-4.3-emscripten)
MVR.pdf |MVR.html✨
MVR/json (API)
NEWS
| # Install 'MVR' in R: |
| install.packages('MVR', repos = c('https://jedazard.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jedazard/mvr/issues
Last updated 2 years agofrom:dd6ae1635e. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win-x86_64 | NOTE | Sep 08 2024 |
| R-4.5-linux-x86_64 | NOTE | Sep 08 2024 |
| R-4.4-win-x86_64 | NOTE | Sep 08 2024 |
| R-4.4-mac-x86_64 | NOTE | Sep 08 2024 |
| R-4.4-mac-aarch64 | NOTE | Sep 08 2024 |
| R-4.3-win-x86_64 | NOTE | Sep 08 2024 |
| R-4.3-mac-x86_64 | NOTE | Sep 08 2024 |
| R-4.3-mac-aarch64 | NOTE | Sep 08 2024 |
Exports:cluster.diagnosticmvrMVR.newsmvrt.testnormalization.diagnosticstabilization.diagnostictarget.diagnostic
Dependencies:statmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Mean-Variance Regularization Package | MVR |
| Function for Plotting Summary Cluster Diagnostic Plots | cluster.diagnostic |
| Function for Mean-Variance Regularization and Variance Stabilization | mvr |
| Function to Display the NEWS File | MVR.news |
| Function for Computing Mean-Variance Regularized T-test Statistic and Its Significance | mvrt.test |
| Function for Plotting Summary Normalization Diagnostic Plots | normalization.diagnostic |
| Real Proteomics Dataset | Real |
| Function for Plotting Summary Variance Stabilization Diagnostic Plots | stabilization.diagnostic |
| Multi-Groups Synthetic Dataset | Synthetic |
| Function for Plotting Summary Target Moments Diagnostic Plots | target.diagnostic |